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What is protein gel electrophoresis? Protein gel electrophoresis is a method that often uses various systems and transfer equipment to separate a diverse mixture of proteins by their molecular weight. Subsequent protein analyses include protein purification, proteomics, and Western Blotting applications. A variety of electrophoresis cells and transfer systems for polyacrylamide gel electrophoresis (PAGE), SDS-PAGE, 2D-PAGE, and wet protein transfer systems are available for your needs.